Yoda is ambushed by Count Dooku's forces while on a mission to bring the planet Toydaria onto the side of the Galactic Republic, and must stay alive in the jungle with a squad of clone troopers.
Jedi Master Plo Koon and his troops fight to stay alive after an attack by the Separatists' powerful new weapon, the starship Malevolence, while Anakin Skywalker and his apprentice Ahsoka Tano try to rescue them.
With help from Master Plo Koon and Ahsoka, Anakin leads an ambitious but risky Y-Wing attack on the Malevolence, hoping to rob the Separatists of their powerful new weapon.
After General Grievous takes Padme Amidala and C-3PO captive, Anakin Skywalker and Obi-Wan Kenobi must rescue them before completing their mission of destroying the Malevolence.
After R2-D2 is lost during a space battle, Anakin searches desperately for the droid before the enemy locates him -- and the military secrets he holds in his memory banks. Ahsoka introduces Anakin to a replacement droid.
Anakin and Ahsoka take their replacement droid, R3-S6, on a mission to rescue R2 from General Grevious' secret listening post, leading to a face-to-face confrontation with the powerful enemy leader.
Ahsoka and Jedi Master Luminara escort the captive Separatist leader Nute Gunray to trial on Coruscant, but are targeted by Count Dooku's assassin Asajj Ventress.
Pursuing Nute Gunray to a remote planet, Jedi Master Kit Fisto and his former Padawan Nahdar Vebb stumble into the lair of General Grievous -- who has been set up by Dooku in order to prove himself to the Separatists.
Obi-Wan and Anakin set out to capture Count Dooku only to learn that the leader of the enemy Separatists has already fallen into the hands of pirates led by Hondo Ohnaka, who are offering him up for ransom.
Jar Jar and a special envoy from the Republic attempt to negotiate the release of Obi-Wan and Anakin, who are being held for ransom by pirates alongside the prisoner Count Dooku.
After Anakin is gravely injured in battle, Ahsoka and a group of others are forced to land on an uncharted planet to search for help -- where they find a village of pacifists called the Lurmen, and Ahsoka learns why the Jedi do not permit personal attachments.
The Jedi try to defend the Lurmen from the Separatist forces when they attack the planet with a devastating new weapon, while their leader refuses to allow his people to be dragged into a war.
On a desolate ice world, Anakin and Obi-Wan are caught in the middle of a conflict between the world's proud inhabitants and visitors from a nearby moon.
The clone commanders discover that they have a traitor in their midst who is transmitting secret intelligence to the Separatists, while Obi-Wan and Anakin find themselves lured into a trap by Asajj Ventress.
Padmé and Jar Jar return home to discover a Separatist plot linked to a hidden bio-weapons lab, where the leak of a deadly virus threatens all of Naboo -- and far beyond.
After Padmé, Ahsoka, and several Clone Troopers are exposed to the fatal Blue Shadow Virus, Anakin and Obi-Wan search the galaxy for an antidote they hope can save their friends.
Ahsoka must learn a difficult lesson after leading a strike force that fails to break the Separatist blockade of the planet Ryloth, and Anakin puts himself in harm's way to try and save the mission.
To save the inhabitants of Ryloth from the Separatists Obi-Wan Kenobi and a squad of clones must infiltrate an occupied town and disable its weapons stronghold.
Mace Windu seeks to forge an alliance with Cham Syndulla, leader of a cell of rebel Twi'leks, in order to liberate Ryloth's capital city from Wat Tambor and the Separatists.
Ruthless bounty hunter Cad Bane leads a team of criminals to take a group of Galactic Senators hostage on Coruscant, including Padmé Amidala -- leaving Anakin alone without his lightsaber as their only hope of rescue.