Obi-Wan and Anakin struggle to keep up with Cad Bane, the villainous bounty hunter who has been hired to infiltrate the Jedi Temple on Coruscant and steal a Jedi holocron.
Anakin and Ahsoka go in pursuit of Cad Bane, who has captured a Jedi sworn to guard a kyber crystal that holds secrets that the enemy must not be allowed to possess.
After Bane gains access to the location of Force-sensitive children the Jedi must try to reach the younglings first to block a Sith plot to undermine the future of the order.
A jealous Anakin follows Padmé on a mission after she agrees to rekindle a personal relationship with a fellow Senator, whom the Jedi Council suspect has secretly allied himself with the Separatists.
Obi-Wan, Anakin, and Ki-Adi-Mundi lead an all-out assault on the Separatist stronghold of Geonosis, where a dealy new weapons factory has just come online.
While Luminara Unduli and Anakin Skywalker distract the Geonosians by attacking their new battle tanks head-on, their padawans Barriss and Ahsoka infiltrate the catacombs below the fortress to try and destroy it from the inside.
After Master Luminara goes in pursuit of the Separatist leader Poggle the Lesser and falls into enemy hands, the Jedi who go looking for her are confronted by a horde of un-dead warriors.
En route to a medical station for supplies Ahsoka and Barriss find themselves unexpectedly pitted against their own Clone Troopers, who have been taken over by Geonosian parasites that put them under the control of the hive mind.
General Grievous captures the Jedi Master Eeth Koth, forcing Republic forces to launch a dangerous rescue mission -- knowing that they might be walking straight into a trap.
While Obi-Wan pursues General Grievous following a crash-landing on the planet Saleucami, an injured Rex encounters a former Clone Trooper who left the fight to embrace a different life.
Obi-Wan travels to Mandalore where an old friend, Duchess Satine, has been accused of siding with the Separatists and breaking the planet's pledge of neutrality in the war -- but finds himself in the hands of a rogue faction.
Having exposed a pro-Separatist faction called the Death Watch on Mandalore, Obi-Wan and Anakin escort Satine and other representatives of the neutral planets to the Senate -- only to find themselves fighting against assassin droids on board the ship.
After arriving at the capital Satine appeals to the Republic Senate to respect Mandalore's neutrality, while unseen forces conspire to manipulate the Senate into voting for an occupation of the planet. After an assassin attacks, Satine finds herself on the run from the law and appeals to Obi-Wan for help.
Padmé and Bail Organa investigate the murder of one of their fellow Senators on the eve of a crucial vote about the war effort, putting themselves at odds with the Senate's investigator.
To deliver much-needed relief to Republic forces on the planet Christophisis, Anakin commands a prototype stealth ship on a mission to sneak past the Separatist Admiral Trench -- a brilliant military strategist.
After their ship is destroyed on the planet Felucia, Anakin, Obi-Wan, and Ahsoka reluctantly join forces with a crew of bounty hunters who have been hired to protect a vulnerable village of spice farmers from a band of pirates led by Hondo Onaka.
Chancellor Palpatine orders a Republic scientist to experiment on the Zillo beast to learn the secrets of its impenetrable armor, only to have the creature escape from captivity and run rampant on Coruscant.
The Jedi welcome a group of young clone cadets on board a Republic cruiser for training operations, unaware that one of them is planning to execute a personal vendetta against Master Windu.
Mace and Anakin search Admiral Killian's crash site on Vanqor and fall into a new trap laid by assassins, leaving R2-D2 with a mission to bring back rescue -- while Boba Fett and the bounty hunters determine to finish the job.
Boba and his bounty hunter friends use their hostages to try and draw out Mace Windu, but instead Plo Koon and Ahsoka take on the task of tracking them down -- from Coruscant's criminal underworld to the distant world of Florrum.